hi all. happy new year.
in reference to PICARD tools found here
https://broadinstitute.github.io/picard/command-line-overview.html
i wanted to know if there is a database of picard tools database that contains list of each picard tool and all the parameters that go with it? Like an excel or maybe a mySQL database of that sort?
any pointers. thanks in advance.
1 answer
Hi there,
If you want a more comprehensive list of Picard commands and parameters you can refer to the Javadoc:
http://broadinstitute.github.io/picard/javadoc/picard/index.html
Or the Picard metric definitions:
https://broadinstitute.github.io/picard/picard-metric-definitions.html
And the FAQ:
http://broadinstitute.github.io/picard/faq.html
Ultimately if you want to have this offline and accessible through a database you can download it with:
wget --no-parent --recursive --level=inf --page-requisites --wait=1 http://broadinstitute.github.io/picard/javadoc/picard/index.html
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