I am trying to dock Thymoquinone to spike protein(6vxx) through HADDOCK online server. But it's showing me: ``` Error in PDB file. Issue when parsing …

Hello Everyone, I have a pdb file for a protein (3D structure predicted by a tool) and around hundreds of known point mutations in the …

Recently I visualize the mutant protein model by Swiss-PDB viewer and download its pdb file. Now I want to check energy minimization by using Gromacs …

import sys import re t=open(sys.argv[1],'r').read() #reading the template sequences blocks=re.split(r'>.*.pdb',t) #Reading all the sequences blocks1=t.split(">") count=[] #Calculate the start gap from the template for fa …

I would like to extract one letter amino acid code from the PDB coordinate file.

Hi, I'm very new to bioinformatic. I have 2 protein (that already have PDB file) and I want to fusion them with a rigid linker …

Hi, I have multiple models in a pdb file and I want to specifically retrieve the atomic coordinates of a model. I wrote the following …

I HAVE A PDB FILE FORMAT OF MY PROTEIN AND I WANT TO CHANGE THE 2 FRAGMENTS WITH HELIX STRUCTURE IN PDB FILE TO SHEET …

Now I worked on "protein structure prediction" project and need to extract data from .pdb file , in this step I have to extract amino …

For a protein crystal structure from the PDB I would like rank small-molecules as putative binders to the protein's active site using a molecular docking …