How to preprocess forest plant (pine) transcriptomes before taking them into assembler?
How to preprocess forest plant (pine) transcriptomes before taking them into assembler for the de novo or the reference guided assembly?
assembly
transcriprome
pine
plant
preprocessing
• 799 views
•
link
written
by
eurobioinformatics •
0 answers
No answers yet.
Log in to answer this question.
More posts like this
-
de novo chromosome level assembly
written by mthm •I have the contigs assembly of a non model species. the assembly itself is made de novo since there is no close reference genome for …
-
Guided genome assembly
written by san96 •Hello everyone, I'm looking for pipeline recommendations. I have DNA sequencing data by pacbio (15G) coming from a plant with a genome of approximately 3G. …
-
Tools for reference-guided de novo assembly of bacterial genome
written by Bushra BibiDear all, Please suggest which tool should i use for optimal assembly of bacterial fastq reads. Which approach is good if reference genome is available: …
-
Recommendation for de novo scaffolder
written by atia.amin2010 •Hi, I performed de novo assembly using Canu following a hybrid method. I have both Illumina (PE) and Oxford Nanopore reads. I performed reference guided …
-
What web software can do gap filling, error correction, elongation, consolidation and qual improvme…
written by uk_plant_parasite_genome •What web or desktop software can do the job of gap filling, error correction, elongation, consolidation and general quality improvement of the transcriptomes coming from …
-
What desktop GUI software is proper for a plant transcriptome de novo assembly and result annotatio…
written by eurobioinformatics •What desktop GUI software is proper for a plant transcriptome de novo assembly and result annotation? And are Prokka and SNPEff are suitable for the …
-
What tools are proper for plant genome pre- and post-assembly and annotation of the de novo results?
written by bioinformatics_bel •What tools are proper for plant genome pre- and post-assembly and annotation of the de novo results? Need specific tools for pine and birch genomes …
-
How to combined de novo and genome guided assembly
written by BioinfonextDear All, I am working a plant species whose draft genome sequence is available. I have done de novo and genome-guided assembly separately, please suggest …
-
Seeking help with transcriptome assembly
written by Svishwan •Hello Biostar members, I am new to the field of NGS data analysis and would like to get some advice on transcriptome assembly of non …
-
Futher analysis on Trinity fasta output
written by WhoknowsHi friends, I used Trinity assembler for de-novo assembly of a plant transcriptome based on same group protocol *"De novo transcript sequence reconstruction from RNA-Seq: …
Hello eurobioinformatics!
We believe that this post does not fit the main topic of this site.
Not a real question
For this reason we have closed your question. This allows us to keep the site focused on the topics that the community can help with.
If you disagree please tell us why in a reply below, we'll be happy to talk about it.
Cheers!