Variants in hs37d5 decoy sequence
Hi, I have just used gatk to call variants with the reference genome hs37d5 . And I got some variants located in the decoy sequence hs37d5. As far as I konw, the decoy sequence hs37d5 is not intended for calling variants but for increasing the mapping rate. So do I need to filter those variatns located in the decoy sequence? I'll appreciate your help!
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chenyufanxin •
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