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how to parse raw reads to unique reads with count for fast alignment

i want to parse raw reads to unique reads with count for fast alignment for use in mirdp. suggest some pipelines except mapper.pl

next-gen rna-seq
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updated by Malcolm.Cook Malcolm.Cook • written by manishbiotechie • manishbiotechie

Hi manishbiotechie,

This question needs more information. Please elaborate on which data you have and what you aim to achieve.

Regards,
Wouter

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written by WouterDeCoster WouterDeCoster

1 answer

see FASTQ/A Collapser

Collapsing identical sequences in a FASTQ/A file into a single sequence (while maintaining reads counts)

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written by Malcolm.Cook Malcolm.Cook

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