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WGCNA error r studio

I m doing WGCNA analysis ,the moment i try to do TOMplot i get this error in my rstudio 

Error: C stack usage 7971860 is too close to the limit

Im running the script on a machine with 128 gb ram ,why am i getting such error i thought there is plenty of memory .

any help or suggestion would be highly appreciated

r
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updated by Biostar Biostar • written by 1769mkc 1769mkc

Have you tried googling "C stack usage is too close to the limit"? Gives plenty of hits.

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written by WouterDeCoster WouterDeCoster

i did there are plenty of links but no one gives a clear solution ..

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written by 1769mkc 1769mkc

I think that I reached this previously when doing partitioning around medoids (PAM) clustering. I think that it's a limit in the very architecture of R and not related to your available memory.

Have you tried running in parallel?

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written by Kevin Blighe Kevin Blighe

"Have you tried running in parallel?" yes kevin but still i get the same error I have like 56 cores in the machine and 128 gb of ram...

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written by 1769mkc 1769mkc

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