Recombination detection tutorial
Please, can anyone help in step-by-step tutorial on how to assess if there is any recombination events in virus if I have Sanger sequences, MSA., phylogenetic tree, etc? Many Thanks in advance
• 3,103 views
•
link
updated
by
babin.yurii •
•
written
by
a.alsayed.phd •
•
written
by
a.alsayed.phd •
1 answer
Actually, I have not ever encountered any step-by-step guide. But you can try the following tools to search for recombination: T-Recs, RAT, RDP-4, Simplot, Swe-blast, etc. There is a whole bunch of them. Some of them are outdated, some of them throw unexpected exception. But still, this is the way somehow to start.
• 1 views
•
link
written
by
babin.yurii •
Log in to answer this question.
More posts like this
-
How to evaluate phylogenetic congruence between two phylogenetic tree?
written by Kumar
-
Is there any tool available to generate ultrametric tree from a rooted phylogenetic tree?
written by Kumar
-
Need Help : Color the Phylogentic tree based on leaf name by ete3
written by shiv •
-
phylogenetic tree of 66 genes common in several cp genomes
written by avnim •
-
Calculate distance matrix from nucleotide alignment with multiple IUPAC ambiguity characters
written by Denis
-
Phylogenetic tree using genomes with Ns
written by sudheer.rvl •
-
Bootstrap & p distance distribution
written by a.alsayed.phd •
-
sense versus antisense (plus or minus) sequence alignment
written by a.alsayed.phd •
-
Minimum numbers of sequence bases in Sanger sequencing
written by a.alsayed.phd •
-
Editing multiple sequence alignments
written by ellen.sepanian •
