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HISAT2-2.0.1 is not installed

Hi,

I am trying to perform mapping by Hisat2 in Ubuntu 17.04 on virtual Box, the installation process was :

downloading and unpacking and copying the .py and hisat to HOME/bin

the message appears: The program 'hisat2' is currently not installed. You can install it by typing: sudo apt install hisat2

I am gonna install the older version of hisat2 which is Hisat2-2.0.1.

Any tips ?

hisat2
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updated by Sej Modha Sej Modha • written by XBria XBria

1 answer

If pre-built executables were downloaded from the website, you need to copy all the executables in your local bin.

• 0 views • link
written by Sej Modha Sej Modha

yep ! I have already done !

• 0 views • link
written by XBria XBria

Did you copy all executables to the bin folder? Does $HOME/bin exists in the $PATH? You can try running which hisat2 to ensure that hisat2 exec are available in the current bash window.

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written by Sej Modha Sej Modha

^ Probably means that OP jumped the gun, posted this question, figured out the problem and now original problem is no longer valid.

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written by GenoMax GenoMax

Dear Sej Modha, Thanksss alot, I had copied incomplete set of files. Checked and added the rest. :)

Again thanks !

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written by XBria XBria

Please accept the answer if it resolved the problem.

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written by Sej Modha Sej Modha

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