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MULTIQC problem

I'm trying to install multiqc on my Ubuntu virtual machine but I get some errors

I do these steps

I activate my environment then I do this command

conda install -c bioconda multiqc

Then I try to do multiqc by this command

multiqc + my fastq file

I get error that multiqc command not found

So I tried to do this command

sudo apt install multiqc

But I get this error

E: Package 'multiqc' has no installation candidate

Any help?

multiqc
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updated by Ram Ram • written by Ahmed • Ahmed

when launching multiqc are you in the environment where you installed it?

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written by Giulia.cosenza • Giulia.cosenza

1 answer

Please do not use -c bioconda.

First, configure your channels as in the Bioconda docs:

conda config --add channels defaults
conda config --add channels bioconda
conda config --add channels conda-forge
conda config --set channel_priority strict

Then install with the simple conda command:

conda install multiqc

See the docs for more.

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written by Phil Ewels Phil Ewels

its working now thanks for your support

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written by Ahmed • Ahmed

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