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Plotting TSS & TTS for Chip-seq peaks

Hello Biostars,

I need a graph showing the distribution of peaks near TSS and transcription termination site (TTS). Can anyone tell me any package/concept for it? I have tried ChIPseeker for TSS plot but I don't know how to plot TTS plot..

Please help me out. Thank you :)

chip-seq plot next-gen
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updated by Simply Bioinformatics Simply Bioinformatics • written by anu014 anu014

3 answers

Hi Anu014,

You can have a look at the HTSeq case (a TSS tutorial): http://htseq.readthedocs.io/en/release_0.9.1/tss.html It should be easily adaptable for TTS as well.

Cheers,

Michael

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written by michael.ante michael.ante

Alternative you could just calculate and visualise the distances yourself. The distances can easily be found with GenomicRanges in R.

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written by Kristoffer Vitting-Seerup Kristoffer Vitting-Seerup

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