Peak calling on MeDIP data
Hi All, I have MeDIP data in the form of Bowtie BAM files. I would like to determine the regions differentially methylated (DMRs) between my samples. How can I extract the information related to the methylation of specific regions of interest, as on this plot? I would like to correlate this information with mRNA expression data from the same biological specimens. I intend to use MEDIPS + MACS peak caller. Is this the right choice, or is there a software better suited for the purpose? Cheers, Lech
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lech.kaczmarczyk •
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