Thank you, this is exactly what I was looking for.
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Biomonika (Noolean)
WGS data for healthy human women sequenced on Illumina HiSeq 2000?
I need to download WGS for healthy women, ideally sequenced on Illumina HiSeq 2000. I intitially looked into 1000G data (http://www.internationalgenome.org/data/), but it doesn't seem to specify which machine was used for sequencing. I am interested in low complexity sequences and thus worried the machine type could make a difference to my downstream analysis.
Thank you.
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Biostar
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Biomonika (Noolean)
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Biomonika (Noolean)
1 answer
How about some of the CEPH pedigree 1463 data (Hiseq2000, 50x). For these, you should also find plenty of validated variant calls if you search around.
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Large chunks of the TCGA cohorts would have been sequenced on the 2000, and I think that information will be obtainable, buried deep in the metadata somewhere.