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Database for bioinformatical applications

Does anyone know a database or a website, where I can find growth mediums, that can be used for bioinformatical simulations? I've joined a research group where we use cobrapy python package and I have to simulate in silico such experiments, which were done in vitro. I can create my own database of growth mediums, but it would help me a lot and save time. Any help here would be appreciated! :)

cobrapy fba
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updated by Moritz E. Beber • Moritz E. Beber • written by kovszasz • kovszasz

Just so we are clear .. you are asking for a database of growth media chemical compositions so that you can do flux balance analysis and such? If yes, then change the title to reflect that need.

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written by GenoMax GenoMax

1 answer

If you are working with E. coli http://prokaryomics.com/ contains quite a wealth of data. In our work for the DD-DeCaF project, we have integrated the prokaryomics data sets in our platform app.dd-decaf.eu where you can apply them to basic simulations of E. coli models.

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written by Moritz E. Beber • Moritz E. Beber

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