How Can I Find Target Genes Of A Transcription Factor with RNA seq Data?
How Can I Find Target Genes Of A Transcription Factor with RNA seq Data?( For plants)
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hodatn •
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hodatn •
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Make a mutant of your TF then sequence the mutants.
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If your question fits in one sentence you probably didn't provide sufficient information for us to answer your question. Please elaborate.
You coul go for a co-expression network with your RNA-seq data matrix and use Genie3 which can handle a list of known TF(s) and find for them their potential targets. https://bioconductor.org/packages/devel/bioc/html/GENIE3.html
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