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Software to predict peptide time-of-flight

I am working with some Mass Spectrometry data comparing expected versus observed outcome. I was looking at the moment for a program to predict which is going to be the time-of-flight of a specific peptide based on its charge/mass; however, I have not been able to find any option at the literature.

Do you know any option?

Thanks in advance.

mass spectrometry maldi
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written by samuelmiver samuelmiver

1 answer

At the end I used this webservice:

http://software.broadinstitute.org/cancer/software/genepattern/esppredictor

'The ESPPredictor module implements the enhanced signature peptide (ESP) predictor method developed by Fusaro et al. (2009). It provides a means of predicting, from sequence alone, which peptides for any given protein are likely to work well for targeted mass spec assay development.'

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written by samuelmiver samuelmiver

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