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How to perform KEGG pathway analysis in R?

I have a couple hundred nucleotide sequences from a Fungus genome. I want to perform KEGG pathway analysis preferably using R package. Could anyone please suggest me any good R package? Thanks

kegg

4 answers

I would suggest KEGGprofile or KEGGrest

You can also do that using edgeR

That's great, I didn't know... very useful if you are already using edgeR!

enrichR is a pretty good tool

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