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How to perform KEGG pathway analysis in R?
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2.1 years ago
MAPK ♦ 1.4k
@MAPK8810

I have a couple hundred nucleotide sequences from a Fungus genome. I want to perform KEGG pathway analysis preferably using R package. Could anyone please suggest me any good R package? Thanks

KEGG • 6.9k views
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3.3 years ago
Fabio Marroni ♦ 2.2k
@Fabio Marroni1969

I would suggest KEGGprofile or KEGGrest

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3.3 years ago
roy.granit • 800
@roy.granit13436

You can also do that using edgeR

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That's great, I didn't know... very useful if you are already using edgeR!

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2.1 years ago
@stevenmarkgalway50374

enrichR is a pretty good tool

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