Question: How to perform KEGG pathway analysis in R?
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I have a couple hundred nucleotide sequences from a Fungus genome. I want to perform KEGG pathway analysis preferably using R package. Could anyone please suggest me any good R package? Thanks

ADD COMMENTlink 2.3 years ago MAPK ♦ 1.4k
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I would suggest KEGGprofile or KEGGrest

ADD COMMENTlink 2.3 years ago Fabio Marroni ♦ 2.2k
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You can also do that using edgeR

ADD COMMENTlink 2.3 years ago roy.granit • 800
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That's great, I didn't know... very useful if you are already using edgeR!

ADD REPLYlink 2.3 years ago
Fabio Marroni
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enrichR is a pretty good tool

ADD COMMENTlink 13 months ago stevenmarkgalway • 10

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