Tool for finding peaks from Chip-seq data at multiple regions.
I have Chip-seq information for a list of TFs. Want to find significant peaks at upstream 500bp of multiple promoter regions. Now I know one can individually look the peaks in a genome browser and confirm out. But this is a hell lot of task.
So, I want to know if is there any tool specifically designed for this task?
This will be very helpful if anyone can let me know. Thank you.
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sangram_keshari
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You can use annotatePeaks.pl from HOMER. You just need to provide the genome fasta file with gene gtf file along with the bed file of your ChIP-Seq peaks.
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