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Linkage disequilibrium after HapMap

Dear All,

After shutting down HapMap, I am finding some difficulties to assess the L.D between SNPs.. any suggestion about an alternative browser is welcomed ..

Thx

snp linkage
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updated by Maki • Maki • written by Kizuna Kizuna

Hi Kizuna, what do you mean by 'shutting down HapMap'? Also, to which 'browser' are you referring?

Kevin

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written by Kevin Blighe Kevin Blighe

2 answers

The automatic choice is Plink.

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written by Pramod Shinde • Pramod Shinde

For simple lookups, see here (based on 1000 Genomes)

https://ldlink.nci.nih.gov/?tab=ldmatrix

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written by Maki • Maki

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