This is a test version of Biostars. For the public version, visit https://www.biostars.org.
Assembly Id to UCSC names

Hi all:

Another NCBI/UCSC question. I have all the assembly Ids such as:

GCA_000001405.15

GCA_000164845.2

And I would like to get the corresponding UCSC assembly name:

hg38

vicpac2

If the Assembly ID corresponds to a patch, and not UCSC is available for it, then I would like to have the closer "parent" assembly. I have created a manual json file for it, but I guess using the NCBI or UCSC services, this is possible programmatically?

REgards Yasset

ucsc ensembl ncbi

Green mark in the post ? Where?

0 answers

No answers yet.

Log in to answer this question.