GeneFuse is a tool to detect and visualize gene fusions. It is written in C++ and only depends on libz library.

It can generate interactive HTML report with following information:

• the fusion genes, along with their transcripts.
• the inferred break point with reference genome coordinations.
• the inferred fusion protein, with all exons and the transcription direction.
• the supporting reads, with all bases colorized according to their quality scores.
• the number of supporting reads, and how many of them are unique (the rest may be duplications)

Informative and interactive HTML report

• Sample report: http://opengene.org/FusionScan/report.html

Github project

https://github.com/OpenGene/FusionScan

HTML report screenshot

See the HTML page of this picture: http://opengene.org/FusionScan/report.html

This tool is renamed to GeneFuse since FusionScan is taken by another older project.