How to determine effect of SNP on the expression of pseudogene.
Hi i am working on linkage of pseudogene to the progression of disease. I have list of pseudogene and in cis-eQTL (-1 to + 1MB region from transcriptional start site) region of that pseudogene, i want to analyze that SNP which falls in this cis-eQTL region, how they affect the pseudogene expression. processed Pseudogene list will be taken from Gencode pseudogene resource.
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