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How to find expression data-set derive from RNA-Seq experiments

Where can I find open access expression data-sets derive from RNA-Seq experiments?

rna-seq sequencing

This is very broad, what do you need exactly? expression data set could mean a lot of things:

  • assembled transcripts
  • gene or transcript counts
  • alternative splicing data
  • normalized data ...

Specially I am searching expressions such as disease or nondisease, mutation or non-mutation.

Hi Michael, Can you help me to find a data-set?

What do you want to do with the data, I am guessing you want to learn how to run some pipelines/tools on them, and the data need to be from which species?

Yeah, that will be my next step. First I need to understand the data structure and what parameters are included. I am searching data set related to homo-sapience.

1 answer

  1. NCBI Short Read Archive : Raw sequencing reads from many, many, projects.

  2. The Cancer Genome Stlas : Cancer transcriptomic data.

  3. Recount : Count tables from human studies.

  4. Most publications make their data available.

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