Hello everyone
I am currently working with Solid sequencing data and prior to the alignment phase I wish to convert my genome into colorspace format. I know this route is preferable over converting the color-space reads into base-space. I have found recommendations for the use of the encodeFasta.py function through the Carona_Lite software. However, when I attempt to download this software through [removed link] I am unsuccessful. Would anyone be able to direct me to an alternative site to download it from or another tool which can achieve the same results.
Many thanks
1 answer
The site you linked is a source of cracked, pirated (and possibly infected with malware) software, so I removed the link.
You can download SOLiD Software, a suite of tools for data processing and analysis of SOLiD data - should have an aligner. Contact ThermoFisher customer support in case you have problems.
And Bowtie can map reads in colorspace, in case you need an alternative.
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