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Assembly using two reference genomes

I need to do a reference based assembly of a hybrid plant. Reference genomes of both parents are available. Is it a good idea to use the first parent 's genome, filter out unaligned reads and align them to the other parent's genome? How can I come to a consensus??

ngs assembly reference unaligned consensus
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written by deepti1rao • deepti1rao

Hello deepti1rao!

Questions similar to yours can already be found at:

We have closed your question to allow us to keep similar content in the same thread.

If you disagree with this please tell us why in a reply below. We'll be happy to talk about it.

Cheers!

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written by Ram Ram

Please do not open multiple posts for the same question.

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written by Ram Ram

Hi Ram, Yes, I did open two posts for the same set of doubts. I did so because I did not get any response for my first post. Can you tell me a way to highlight my post, so that I can get some help as soon as possible? It's really important for me to get some leads!

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written by deepti1rao • deepti1rao

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