anchor scaffolds to chromosome
Hi,everyone I have a draft plant genome that only assembly to scaffolds level. The genome size is about 3Gb and there are amost 37000 scaffolds with N50 of 450kb. So can i anchor these scaffolds to chromose level using a genetic map produced by GBS method? Is there any sortwares or protocols would help me to do this ? Any suggestions would be appreciated. best regards!
• 1,919 views
•
link
written
by
cx18751966338 •
0 answers
No answers yet.
Log in to answer this question.
More posts like this
-
Merging biological replicated SNP data to create a consensus SNP data for a sample
written by AF •
-
bootstrapping genomes for demographic analysis
written by truebeliever24 •
-
Comparative Genome analysis
written by netipandey.87 •
-
How to construct draft genome of virus using Trinity de novo assembler?
written by mathavanbioinfo
-
About the method for removing the SNP markers with more than 10% of missing data?
written by r00628112 •
-
best programs for alignment of large whole genomes?
written by vulpecula •
-
identification of piRNA sequences from small RNA-seq data?
written by a.rex
-
plant genome assembler?!
written by Prasad
-
From Contigs To Chromosome Scale Scaffold
written by Jianguo Lu
-
Genome Assembly With Physical Map
written by Plantae
