Hello Biostars community, I'm currently conducting haplotype-based association studies using phased haplotypes generated with SHAPEIT. While I have successfully phased my haplotypes, I'm encountering challenges …

Hi All, I want to generate some simulation data for genome-wide association study (GWAS). What's the best genetic data simulation tool? GPOPSIM, GCTA or sim1000G？ …

Hi, I want to do genome-wide association studies of ordinal phenotypes (1,2,3,4,5). Since my phenotypic data is not continuous, I cannot use a generalized linear …

Can a PhD thesis in bioinformatics be done within the area of Genome wide association studies alone. Is it robust enough?

Hi, I will like to carry out variant calling from fastq files (whole genomes from a large number of samples ~ several hundreds) for genetics …

Hi can anybody suggest me a best graphical representation for permutation data. i have results from like 100, 1000, 3000 permutations and i want to …

Hi everyone, I am new in analyzing NGS data. Just want to ask how do you guys learn the strategies/ get yourself update in analyzing …

Hi, Recently, we got a project connected with genome genome wide association studies. We are trying to associate around 30 SNPs with aneurysm. We have …

Hi all, this may not be the right place to ask this type of question, if someone could point me to a better place to …

<p>Do we need to impute the missing values before finding the significant markers in genome wide association studies? Specifically, using PLINKs permutation tests to find …