dbsnp file for C. elegans
0
0
Entering edit mode
6.8 years ago
biomagician ▴ 410

Hi,

I want to use this tool here from GATK:

https://software.broadinstitute.org/gatk/documentation/tooldocs/current/org_broadinstitute_gatk_tools_walkers_varianteval_VariantEval.php

VariantEval

It has the optional option to input a dbsnp file --dbsnp. Does anybody know where I can find such a file for C. elegans?

Also, what is a dbsnp file? I know that dbsnp is a database (https://www.ncbi.nlm.nih.gov/projects/SNP/) but is it also a format or does the dbsnp file come in VCF format?

Thanks.

Best wishes,

C.

variation-file c.elegans dbsnp gatk • 1.9k views
ADD COMMENT
0
Entering edit mode

May be wormbase has it?

ADD REPLY

Login before adding your answer.

Traffic: 2525 users visited in the last hour
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6