Parsing augustus output
1 answer
I know it's quite late but in case somebody else has the same question. Augustus has a bunch of scripts for the postprocessing in the installation directory under augustus-x.x.x/scripts/. The basic parsing script is called getAnnoFasta.pl and takes the resulting gtf/gff as the input and outputs two files, one with nucleotide fasta (.codingseq) and the other one with protein fasta (.aa).
I guess you can find other useful scripts there as well.
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