Sej thank you so much !! :D
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jacobnix •
about weeSam command
Hello everybody ,
I'm trying to use MetaVic Pipeline (Metagenomics without reference) but in the Assemble. sh script , they are using weeSAM command , I have tried to search this app or command weeSAM without success :
https://github.com/sejmodha/MetaViC/blob/master/Assemble.sh
some extract Assemble.sh shell script:
samtools view -b $3.sam > $3.bam
samtools sort -o $3_sorted.bam $3.bam samtools index $3_sorted.bam
weeSAMv1.1 -b $3_sorted.bam -out $3_weeSAM_out
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Sej Modha
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jacobnix •
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jacobnix •
1 answer
weeSAM is a custom script written by Joseph Hughes that is part of the MetaViC pipeline and available to download from https://github.com/josephhughes/Sequence-manipulation/blob/master/weeSAMv1.1
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