This is a test version of Biostars. For the public version, visit https://www.biostars.org.
Publication-Quality Multiple Sequence Alignment

Hello everybody,

I run some alignments and I would like to generate great images from the ALN file. What can I use to make publication-quality images, preferably, with extra graphics.

msa image quality graphics publication
• 5,949 views • link
written by l.souza l.souza

Thank you, Pierre! But, does jvarkit show all the aas from the msa or just this bars?

• 0 views • link
written by l.souza l.souza

just this bar, sorry not suitable for "I mean graphics with the quality, the identity/similarity, etc..." :-)

• 0 views • link
written by Pierre Lindenbaum Pierre Lindenbaum

2 answers

I used ESPript 3.0 and JProfileGrid.

• 0 views • link
written by l.souza l.souza

Try BoxShade. What do you mean by "extra graphics"?

edit: see also msa and prettyplot.

• 0 views • link
written by h.mon h.mon

I mean graphics with the quality, the identity/similarity, etc...

• 0 views • link
written by l.souza l.souza

Anyway to let boxshade to show the result with colorful style? Thanks.

• 0 views • link
written by Shicheng Guo Shicheng Guo

Log in to answer this question.

More posts like this