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GATB-CORE set up in LoRDEC

I am installing LoRDEC for long read correction.

Following is the installation instruction of LoRDEC. I am having trouble with the 4th step. Could anyone give me some advice? Thank you so much!

  1. Unpack LoRDEC-0.6.tar.gz.

  2. cd LoRDEC-0.6

  3. Download the GATB Core library from http://gatb-core.gforge.inria.fr/. LoRDEC has been tested with GATB Core 1.0.6. Either download the binary version or follow the instructions to build the GATB Core library from the sources. for linux systems type: make installdep

  4. Modify the GATB variable in Makefile in the LoRDEC-0.6 directory to point to your installation of GATB Core library.

  5. Run make in directory LoRDEC-0.6.

gatb-core lordec variable long read correction
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updated by Biostar Biostar • written by shuchen • shuchen

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