This is a test version of Biostars. For the public version, visit https://www.biostars.org.
Error while Blat installation

Hii.... I've followed the installation instruction for installing Blat(for PASA) from https://bioinformaticsonline.com/pages/view/37677/installing-blat-on-linux but, after the make command i have got the following errors. I was searched for a solution but, nothing is satisfactory. Can anyone please help me out of this? Thank you in advance..

   make[1]: Leaving directory '/home/Documents/EZ/EVM/PASA/blatSrc/lib'
    cd jkOwnLib && make
    make[1]: Entering directory '/home/Documents/EZ/EVM/PASA/blatSrc/jkOwnLib'
    ar rcus ../lib//jkOwnLib.a bandExt.o crudeali.o ffAliHelp.o ffSeedExtend.o fuzzyFind.o genoFind.o gfBlatLib.o gfClientLib.o gfInternal.o gfOut.o gfPcrLib.o gfWebLib.o ooc.o patSpace.o splix.o supStitch.o trans3.o xenbig.o xensmall.o 
    ar: `u' modifier ignored since `D' is the default (see `U')
    make[1]: Leaving directory '/home/Documents/EZ/EVM/PASA/blatSrc/jkOwnLib'
    cd blat && make
    make[1]: Entering directory '/home/Documents/EZ/EVM/PASA/blatSrc/blat'
    make[1]: *** No rule to make target '../lib//jkweb.a', needed by 'blat'.  Stop.
    make[1]: Leaving directory '/home/Documents/EZ/EVM/PASA/blatSrc/blat'
    makefile:2: recipe for target 'all' failed
    make: *** [all] Error 2
pasa blat evm transcript assembly
• 1,784 views • link
written by ashaneev07 • ashaneev07

If you are academic user you can download pre-compiled blat from this link (linux version linked macOS available). Remember to add execute permissions afterwards: chmod +x ./blat.

Did you follow the install instructions on that page? What OS are you trying to install this on?

• 0 views • link
written by GenoMax GenoMax

0 answers

No answers yet.

Log in to answer this question.

More posts like this