TPM with Ballgown?

Question

[samuel]

Hi, I'm a little confused and I'm hoping someone can explain things clearly for me. Is it possible to use TPM if I use Tablemaker in the Ballgown package? If not could someone explain to me how I would go about using TPM for transcript analysis? Thanks.

Answer 1

[Siegfried]

it seems ballgown haven't support TPM output now...