This is a test version of Biostars. For the public version, visit https://www.biostars.org.
Public datasets with UMI

Are there any public datasets that have Unique molecular identifiers of some sort in the reads? It would be interesting to see or test that data, but I am not familiar with any available data.

Also, I tried the data in this paper https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4907374/. The data sets seem to be already trimmed of UMIs, as far as I can tell, or I might be missing something.

Does anyone have any advice on datasets?

Thanks in advance!

sequencing adapters umi

2 answers

Try the datasets referenced in this paper:

https://www.ncbi.nlm.nih.gov/pubmed/28100584

Thank you very much!

Log in to answer this question.