What is a rational way to filter VCF and other genome files using BED file with selected genes?
What is a rational way to filter VCF and other genome files using BED file with selected genes?
I found similar there -- Extract Sub-Set Of Regions From Vcf File. Is there any Python and R or Ruby/Java elegant solution for this common task? And how that can be done using Galaxy tools?
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Devon Ryan
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matveyspr •
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matveyspr •
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bedtools intersect is available in Galaxy ("Intersect Intervals") and can do this.
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