Filter by multiple columns above count threshold in R
So I'm having a brain cramp and I think I'm over thinking it. I'm doing an RNA-seq experiment and want to filter my counts table by if at least four columns have above 20 counts. Any clue how to do this? The function I wrote takes way too long and there has got to be an easier way.
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Michael Dondrup
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datascientist28
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datascientist28
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mycounts[rowSums(mycounts >= 20) >= 4, ]
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So, what have you tried? It would be more useful for learning process if you show your efforts and thinking process.