is there an IMR90 cell line complete genome sequence available · Biostar

This is a test version of Biostars. For the public version, visit https://www.biostars.org.

is there an IMR90 cell line complete genome sequence available

Hi, I'm trying to determine if there is a complete genome of the human cell line IMR90. I found GEO accession GSM1296454 which is a whole genome sequence of IMR90. However, that would just be the individual SOLID reads. Does anybody know if the reads have been assembled into a complete genome and where I can download it?

Thank you

genome

• 2,030 views • link

written 9.3 years ago by pcantalupo

0 answers

No answers yet.

Log in to answer this question.

More posts like this

"Nothing has been found for accession" in run selector?
written 4.7 years ago by Wang •

When I put accession to https://www.ncbi.nlm.nih.gov/Traces/study/, project accession or sample accession have same output "Nothing has been found for accession". The dataset was in https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE178341. …
Where do I share a single-cell dataset?
written 5.1 years ago by Lluís R.

Where is the best standard place to store single-cell datasets to be accessible for the community? Is GEO the right place? I looked up some …
Looking for DNase-seq of MCF10A cell line
written 8.5 years ago by bhchiang •

Where can I find data from a DNase-seq assay of the non-cancerous MCF10A breast cell line aligned to the hg19 genome? I've found the following: …
RNA-seq HEK293T recent datasets
written 9.1 years ago by Sergio Martínez Cuesta

Dear all, I am currently exploring ArrayExpress/GEO for relevant datasets, but I was wondering if anyone is aware/have used any recent RNA-seq datasets involving the …
Job: RNA Seq. analysis tutor for specific datasets for visually impaired student needed
written 9.5 years ago by tfhahn •

I am looking for a patient tutor, who can teach me remotely with Team Viewer and Skype how to analyze the following datasets and possibly …
GEO (NCBI) confusing data
written 10.5 years ago by silas008

Hi, I'm have some problems with one data shared on GEO: In this link: http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE19414, we can find a list of 26 samples. Clicking on …
A large drug applied microarray dataset (Human)
written 11.1 years ago by Bioinformatist Newbie

<p>I am looking for some micro-array data set like used by <a href="http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE5258">Connectivity MAP</a>; human cancer cell lines and different drugs applied to them. Preferably …
Peak Calling with MACS (treat and control samples)
written 11.3 years ago by ukpersia1 •

I would like to use MACS for differential peak calling. I have a set of data ([GSM947524][1]) (cancer data as treatment data) and was wondering …
How To Find The Strand-Specific Info In The Public Data From The Illumina Human Body Map 2.0 Project
written 13.5 years ago by camelbbs

<p>Hi,</p> <p>Anyone can guide a while how to find if this public rnaseq data are prepared by strand-specific assay. Thanks a lot!</p> <p><a href="http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE30611">http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE30611</a></p> <p>Ch</p>
Download Geo Tar File Automatically From Linux/Unix
written 13.6 years ago by dfernan

<p>Hi,</p> <p>I'd like to automatically download the tar files from the following links, does anyone knows how to do that?</p> <p><a href='http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE39977'>http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE39977</a></p> <p><a href='http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE36375'>http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE36375</a></p> <p>Kind …