Hi. I am looking to run a blast query of some nucleotide sequences against an insect protein database to test for functional enrichment using the -blastx command. I've tried to find some insect protein databases and found some such as http://www.insect-genome.com/, but I am unsure which one is the best to use and which exactly are files I need to download which will be compatible with blastx. Can anyone point me in the right direction? thanks,
1 answer
go to the NCBI taxonomy insect: https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&id=50557&lvl=3&lin=f&keep=1&srchmode=1&unlock
on the left , got to the protein page
button 'send to' -> file/fasta
download and make the blastdb for this fasta file
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