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Run tblastx against SRA files

Hello!

I would like to ask you if its possible to run a tblastx (Search translated nucleotide database using a translated nucleotide query) or blastx (Search protein database using a translated nucleotide query) against some SRA files locally. SRA files will be the database in this situation. I saw that NCBI supports only blastn against SRA databases.

Thank you.

sequence blast next-gen
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updated by Ram Ram • written by arronar arronar

I think you need to convert the .SRA files to either fastq or fasta before performing the analysis.

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written by Prakki Rama Prakki Rama

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