how to get a list of genes affected by a transcription factor?
i'm working on a gene that codes for a transcription factor and I want to know all the genes that are either associated with that gene or are affected by the transcription factor directly. which database should i go to?
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galkimhi123 •
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galkimhi123 •
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If you mean interaction with 'associated', you can try the string db. You can look in GEO for ChIP-seq experiments with your TF, or design a experiment yourself if it's not done yet!
In which species are your working?
Working with Human...
Check ENCODE: https://www.encodeproject.org/
thanks for the info!