This is a test version of Biostars. For the public version, visit https://www.biostars.org.
PANTHER vs WebGestalt

Hello, which one is more reliable while dealing with Over representation Analysis of NGS/ MicroArray data? I was checking these two database with same query data and i got drastic difference in the results. Any suggestion regarding ORA is most welcome.

enrichment pathway enrichment

1 answer

Hi Sanathoi, I am also dealing with the same NGS data. You can use BinGO, a cytoscape plugin which is very useful as you can visualize the data. WenGestalt is more easy to use.

Log in to answer this question.