Thanks you! I'm going to try it
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Manuel Mendoza •
R reads q-score
Hello,
I want to calculate the read q-score (one per one) in a fastq file. Does anyone know any R package to do it?
I am working with RNA-seq data and I want to trim the read data (Read q-score>30). How can i do that using R? I don't want to use python.
Thanks you.
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Manuel Mendoza •
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What's that?
And why is "proteomics" a logical tag for your question?
because i want to assemble the proteome after clean up my data
http://hannonlab.cshl.edu/fastx_toolkit/commandline.html#fastq_quality_filter_usage
helps to filter the reads by quality score.