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nikelle.petrillo
nikelle.petrillo
Reputation:
110
Joined:
10.7 years ago
Last seen:
9.1 years ago
Location:
Providence College, Providence, RI
Latest posts by user
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Comment: C: weird STAR output, bash scripting problem
written by nikelle.petrillo nikelle.petrillo
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2 replies
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Comment: C: weird STAR output, bash scripting problem
written by nikelle.petrillo nikelle.petrillo
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1 reply
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Comment: C: weird STAR output, bash scripting problem
written by nikelle.petrillo nikelle.petrillo
0 votes
12 replies
4.3K views
weird STAR output, bash scripting problem
rna-seq star bash
updated by h.mon h.mon • written by nikelle.petrillo nikelle.petrillo
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0 replies
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Comment: C: automated script to trim paired end RNA seq reads using Trimmomatic
written by nikelle.petrillo nikelle.petrillo
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1 reply
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Comment: C: automated script to trim paired end RNA seq reads using Trimmomatic
written by nikelle.petrillo nikelle.petrillo
0 votes
1 reply
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Comment: C: automated script to trim paired end RNA seq reads using Trimmomatic
written by nikelle.petrillo nikelle.petrillo
1 vote
8 replies
6.8K views
automated script to trim paired end RNA seq reads using Trimmomatic
rna-seq trimming trimmomatic loops
updated by h.mon h.mon • written by nikelle.petrillo nikelle.petrillo
0 votes
2 replies
12K views
Downloading Fastq files from ENA using FTP
fastq rna-seq ena
updated by Ram Ram • written by nikelle.petrillo nikelle.petrillo
0 votes
3 replies
2.5K views
How to see what percentage of reads remain after quality filter to a certain phred score
phred fastqc rna-seq quality control
written by nikelle.petrillo nikelle.petrillo
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1 reply
0 views
Comment: C: Genome guided assembly with Trinity using STAR genome index
written by nikelle.petrillo nikelle.petrillo
1 vote
6 replies
6.3K views
Genome guided assembly with Trinity using STAR genome index
rna-seq star trinity
updated by ChanderKant (CK) Chaudhary • ChanderKant (CK) Chaudhary • written by nikelle.petrillo nikelle.petrillo
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3 replies
2.2K views
Number of contigs does not match number in count matrix --- de novo assembly
trinity rna-seq assembly
updated by Ram Ram • written by nikelle.petrillo nikelle.petrillo
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3 replies
5.8K views
How to determine number of contigs used in Trinity assembly?
trinity de assembly rna-seq
updated by Ram Ram • written by nikelle.petrillo nikelle.petrillo
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2 replies
1 view
Comment: C: using IGV to visualize RNA seq alignment to transcriptome
written by nikelle.petrillo nikelle.petrillo
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4 replies
7.2K views
using IGV to visualize RNA seq alignment to transcriptome
rna-seq igv alignment
updated by Ram Ram • written by nikelle.petrillo nikelle.petrillo
0 votes
1 reply
1 view
Comment: C: differential expression analysis, trinity error
written by nikelle.petrillo nikelle.petrillo
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1 reply
1 view
Comment: C: differential expression analysis, trinity error
written by nikelle.petrillo nikelle.petrillo
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0 replies
1 view
Comment: C: do i need to run Trinity assembly ALL over?
written by nikelle.petrillo nikelle.petrillo
0 votes
5 replies
2.9K views
differential expression analysis, trinity error
de rna rna-seq trinity
updated by GenoMax GenoMax • written by nikelle.petrillo nikelle.petrillo
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