I would recommend igraph as well and found this tutorial extremely useful: http://kateto.net/netscix2016
ploting a network of mRNAs and miRNAs
hi,
I have expression profiles of 192 miRNAs and experimentaly validated targets in two separate txt files, how I can plot which miRNA connected with which mRNA via a network??? I tried parmigene R package but depending on miRNAs and mRNAs placed in row network contains only miRNAs or mRNA. then what to do please???
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This sounds like a visualisation problem, so Cytoscape seems appropriate, unless you want to stick with R, in which case I'd suggest iGraph.
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