I am working with cuffdiff 2. Looking at the isoform.count_tracking file there are several columns of the form :
count, count_variance, count_uncertainty_var, count_dispersion_var, status.
On the cuffdiff website there is a broken link to the count tracking files. I was wondering what do the columns mean? Specifically, how are the columns
count_variance, count_uncertainty_var, count_dispersion_var, status.
computed? Also does someone have the docs for how the columns in fpkm_tracking files are computed/determined? It is also missing.
1 answer
The information is here : http://cole-trapnell-lab.github.io/cufflinks/file_formats/#count-tracking-format
It appears to be a webpage orphaned from the rest of the website.
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