Hi I am using two bioinformatics tools for identifying CRISPR repeats. These tools are pilercr and CRT. How to compare the output of these two tools especially how to know which one is better? My thoughts on this is to run my sample reads and reference genomes on both tools with and then find the matches between ref and sample reads or 2nd run blast using sample and ref and find out exact matches between the blast output and the tools output.. which approach is correct? or is there any other way I can decide which tool is better compared to other?