miRNA target prediction tool
Hi,
I'm looking for a microRNA target prediction tool, which allow me to choose a type of complementarity. For example, I want to find out only microRNA-mRNA pairs, in which not only a seed region, but also a rest of nucleotides are complementary.
thanks dentepre
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For entire interaction you can use bowtie or bowtie 2. Mapping miRNAS to transcriptomic data.
I think you can search for global alignment and local alignment tools. I used bio python package for this kind of jobs.