finding normal and cancer samples from TCGA expression data
hello,
in TCGA expression data https://www.synapse.org/ for colorectal cancer I found a file named bcgsc.ca_COAD_IlluminaHiSeq_miRNASeq.whitelist_tumor but there is not such a file for normal sample or might be normal samples embeded within this file that I can't differentiate them.
who knows how I can find both normal and tumor samples please?
thank you
• 3,198 views
•
link
updated
by
poisonAlien
•
written
by
zizigolu
•
written
by
zizigolu
1 answer
AFAIK, TCGA does not do RNA seq for normal samples.
EDIT: Turns out there are few RNA seq for normals. You can identify them from their barcode (4th slot, should be 10 to 19). See here: https://wiki.nci.nih.gov/display/TCGA/TCGA+barcode
• 0 views
•
link
written
by
poisonAlien
Log in to answer this question.
More posts like this
-
RNA-seq data for binary classification problem
written by botloggy •
-
Matched Normal Tissue Sample of RNAseq data from TCGA
written by rajesh
-
TCGA - Correlation between gene expression and CNV
written by rin •
-
Differential gene expression Analysis - sample Size
written by David_emir
-
Large number of breast tumor and matched normal samples other than TCGA
written by thejustpark
-
TCGA: how to download matched normal and tumor samples from TCGA website.
written by morrovvatim60 •
-
looking for TCGA gene expression Normal Samples
written by Peter Chung
-
Second normalization for TCGA data
written by yuyu •
-
Normal Patient Samples from GSE62944
written by hAjmal •
-
TCGA RNA-Seq, Expression levels in comparison with normal and connection with CNVs
written by thmourikis •
TCGA: Does TCGA cancer studies have mRNA expression data for Control/Normal samples?