RNA Motif discovery tools

Hello all,

Can you please help me in providing an alternate link to download cmFINDER-motif discovery tool as the main link mentioned here : http://bio.cs.washington.edu/yzizhen/CMfinder/, seems to be inaccessible.

Thank You

motif-discovery rna cmfinder

• 2,228 views • link

updated 3.2 years ago by Ram

• written 9.5 years ago by arunbodd •

1 answer

There is one repo on bioconda https://bioconda.github.io/recipes/cmfinder/README.html

• 0 views • link

written 8.9 years ago by jaimep887 •

More posts like this

Data download from Roadmap
written 7.7 years ago by bioinfo456

Hi all, I'm trying to download data from the [Roadmap][1] and I get the following error, "Couldn't connect to database hgcentral on localhost as genie. …
Downloading HISAT2-2.0.1 NOT possible
written 8.8 years ago by XBria

Hello, I am trying to download Hisat2-2.0.1. The main link to the website is not accessible. Please help me a.s.a.p the link is : http://ccb.jhu.edu/pub/infphilo/hisat2/downloads/hisat2-2.0.1-Linux_x86_64.zip …
Tophat alignment against BALB_cJ_R
written 8.8 years ago by anu014

Greetings of the day Biostars! Can anyone tell me where can I download genome for BALB_cJ_R ? I'm trying to align it with TopHat. All …
Problem in getting Block diagram obtained after meme motif (Em analysis)
written 9.1 years ago by Vinay Singh •

Hello all, I am doing motif analysis in my protein sequences, i have submitted my sequences in meme motif suite, i result i got block …
SpliceR visualization tool
written 9.4 years ago by Prasad

Dear all, i have performed alternate splicing analysis using `SpliceR`. I want to visualize these splicing event results. Are there any tool to visualize spliceR …
Cytoscape Motif-Discovery plugin
written 9.5 years ago by The Last Word

Hi, I am trying to find possible motifs in my network on Cytoscape. As of now, the only app which gives me soe credible results …
How to create out dir's using shell scripting to run FIMO on multiple files?
written 9.8 years ago by arunbodd •

Hello everyone, I am trying to run FIMO on my server for multiple motif files. But it cannot create output directories instead overwrites the output …
Alternate splicing-rMATS error
written 10.0 years ago by arunbodd •

Hello all, I am trying to analyze RNA-Seq data for alternate splice sites. I am using rMATS to do that but getting the following error: …
Is there a tool to retrive transcription factors (Tfs) which have the common binding site?or a tool…
written 11.0 years ago by mary99 •

Hello, I am doing chip-seq down stream analysis.After motif discovery I found several transcription factors and their motifs plus my Tf of my interest.In my …
De Novo Motif discovery in protein sequences
written 11.5 years ago by aouledelhaj.salma •

Hi, Can you please explain to me what's De Novo Motif discovery in protein sequences? (characteristics, advantages, limits...) Thank you!