De Novo Motif discovery in protein sequences

Hi,

Can you please explain to me what's De Novo Motif discovery in protein sequences? (characteristics, advantages, limits...)

Thank you!

motif-discovery protein-sequences de-novo

• 2,182 views • link

updated 4.3 years ago by Ram

• written 11.5 years ago by aouledelhaj.salma •

1 answer

You can get good info just using google: http://en.wikipedia.org/wiki/Sequence_motif

• 0 views • link

updated 4.3 years ago by Ram

• written 11.5 years ago by dago

More posts like this

de novo Transcription Factor Discovery for a Single Gene
written 4.6 years ago by Sai Prasada •

Hi! I am trying to perform de novo motif discovery of a single genes, but I am a little unsure of which algorithm to use. …
Bit-Score in DNA motifs for Dummies
written 9.1 years ago by ATpoint

Hi, I have a problem that I cannot get my head around. I tried to understand the basis of bit-scoring in DNA motifs. Given I …
RNA Motif discovery tools
written 9.5 years ago by arunbodd •

Hello all, Can you please help me in providing an alternate link to download cmFINDER-motif discovery tool as the main link mentioned here : http://bio.cs.washington.edu/yzizhen/CMfinder/, …
Motif prediction with MEME
written 9.6 years ago by arunprasanna83 •

Hello, I am trying to do motif discovery for ~22000 promoter sequences each with length 1000 bp. I have a local installation of MEME. I …
HOMER motif discovery gives inconsistent results on repeated runs
written 10.3 years ago by steve

I use HOMER often for de novo and known motif discovery, but I have found that when the number of input sequences are low the …
Please share the best tool for de novo motif discovery in large dataset
written 11.5 years ago by seta

Hi everybody, Could anybody please let me know what is the best tool for de novo motif discovery in large dataset, say 50 Mb sequencing …
Refseq proteins for several taxids
written 11.6 years ago by seta

Hi all, My question may sound simple. I'm trying to download the **plant ref-seq proteins** from NCBI to make blast database and run blastx for …
Best Tools For Motif Finding And/Or De Novo Motif Discovery?
written 14.1 years ago by enricoferrero

Hi everybody, I'm looking for tools to do motif finding and/or de novo motif discovery on large genomic datasets (ChIP-on-ChIP, ChIP-Seq, DamID). What are your …
How To Interpret The Results Of De Novo Motif Discovery?
written 14.3 years ago by Gahoo

As we know, we can obtain the sequence motif from promoter sequences of differentially expressed genes derived from microarray experiments by de novo motif discovery …
Tools For Chipseq Scale De Novo Motif Finding On Unaligned Sequences?
written 15.1 years ago by 2184687-1231-83-

Following up on this question: <a href="http://biostar.stackexchange.com/questions/598/tools-for-chipseq-scale-motif-finding">http://biostar.stackexchange.com/questions/598/tools-for-chipseq-scale-motif-finding</a> I've got a large amount of unaligned eukaryotic regulatory sequences and I want to do de novo …